PoplarV1, Main, Exploration, bibRecord, 000873

Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar.

Identifieur interne : 000873 ( Main/Exploration ); précédent : 000872; suivant : 000874

Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar.

Auteurs : Weibing Zhuang [République populaire de Chine] ; Hongxue Wang [République populaire de Chine] ; Tianyu Liu [République populaire de Chine] ; Tao Wang [République populaire de Chine] ; Fengjiao Zhang [République populaire de Chine] ; Xiaochun Shu [République populaire de Chine] ; Henghua Zhai [République populaire de Chine] ; Zhong Wang [République populaire de Chine]

Source :

Scientific reports [ 2045-2322 ] ; 2019.

RBID : pubmed:31371772

Descripteurs français

KwdFr :
- Anthocyanes (analyse), Anthocyanes (biosynthèse), Anthocyanes (génétique), Caroténoïdes (analyse), Couleur (MeSH), Feuilles de plante (composition chimique), Feuilles de plante (génétique), Gènes de plante (génétique), Génome végétal (génétique), Génomique (MeSH), Pigmentation (génétique), Populus (génétique), Régulation de l'expression des gènes végétaux (MeSH), Variation génétique (MeSH).
MESH :
- analyse : Anthocyanes, Caroténoïdes.
- biosynthèse : Anthocyanes.
- composition chimique : Feuilles de plante.
- génétique : Anthocyanes, Feuilles de plante, Gènes de plante, Génome végétal, Pigmentation, Populus.
- Couleur, Génomique, Régulation de l'expression des gènes végétaux, Variation génétique.

English descriptors

KwdEn :
- Anthocyanins (analysis), Anthocyanins (biosynthesis), Anthocyanins (genetics), Carotenoids (analysis), Color (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Genetic Variation (MeSH), Genome, Plant (genetics), Genomics (MeSH), Pigmentation (genetics), Plant Leaves (chemistry), Plant Leaves (genetics), Populus (genetics).
MESH :
- chemical , analysis : Anthocyanins, Carotenoids.
- chemical , biosynthesis : Anthocyanins.
- chemical , genetics : Anthocyanins.
- chemistry : Plant Leaves.
- genetics : Genes, Plant, Genome, Plant, Pigmentation, Plant Leaves, Populus.
- Color, Gene Expression Regulation, Plant, Genetic Variation, Genomics.

Abstract

Colored-leaf plants are increasingly popular and have been attracting more and more attentions. However, the molecular mechanism of leaf coloration in plants has not been fully understood. In this study, a colored-leaf cultivar of Populus deltoides (Caihong poplar, CHP) and green-leaf cultivar of Populus deltoides L2025 were used to explore the mechanism of leaf coloration through physiological and the whole genome resequencing analysis. The content of anthocyanins, total Chl, and carotenoids in the leaves of CHP and L2025 were evaluated. The ratio of anthocyanins to total Chl in CHP was 25.0 times higher than that in L2025; this could be attributed to the red leaf color of CHP. Based on the whole genome resequencing analysis, 951,421 polymorphic SNPs and 221,907 indels were screened between CHP and L2025. Using qRT-PCR analysis, three structural genes (flavonol synthase 1 family protein, UDP-glucose flavonoid 3-O-glucosyltransferase 3' and flavonoid 3-O-galactosyl transferase family protein) and six transcription factors (MYB-related protein Myb4, transcription factor GAMYB, PtrMYB179, transcription factor bHLH53, transcription factor bHLH3, VARICOSE family protein) may be involved in the anthocyanin synthesis pathway, which could be used as candidate genes to explore the molecular regulation mechanism of leaf coloration in Populus deltoids, and could be used in molecular breeding in the future.

DOI: 10.1038/s41598-019-47681-9
PubMed: 31371772
PubMed Central: PMC6673700

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000772
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Le document en format XML

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<term>Carotenoids (analysis)</term>
<term>Color (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Plant (genetics)</term>
<term>Genetic Variation (MeSH)</term>
<term>Genome, Plant (genetics)</term>
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<term>Feuilles de plante (composition chimique)</term>
<term>Feuilles de plante (génétique)</term>
<term>Gènes de plante (génétique)</term>
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<term>Génomique (MeSH)</term>
<term>Pigmentation (génétique)</term>
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<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Variation génétique (MeSH)</term>
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<front><div type="abstract" xml:lang="en">Colored-leaf plants are increasingly popular and have been attracting more and more attentions. However, the molecular mechanism of leaf coloration in plants has not been fully understood. In this study, a colored-leaf cultivar of Populus deltoides (Caihong poplar, CHP) and green-leaf cultivar of Populus deltoides L2025 were used to explore the mechanism of leaf coloration through physiological and the whole genome resequencing analysis. The content of anthocyanins, total Chl, and carotenoids in the leaves of CHP and L2025 were evaluated. The ratio of anthocyanins to total Chl in CHP was 25.0 times higher than that in L2025; this could be attributed to the red leaf color of CHP. Based on the whole genome resequencing analysis, 951,421 polymorphic SNPs and 221,907 indels were screened between CHP and L2025. Using qRT-PCR analysis, three structural genes (flavonol synthase 1 family protein, UDP-glucose flavonoid 3-O-glucosyltransferase 3' and flavonoid 3-O-galactosyl transferase family protein) and six transcription factors (MYB-related protein Myb4, transcription factor GAMYB, PtrMYB179, transcription factor bHLH53, transcription factor bHLH3, VARICOSE family protein) may be involved in the anthocyanin synthesis pathway, which could be used as candidate genes to explore the molecular regulation mechanism of leaf coloration in Populus deltoids, and could be used in molecular breeding in the future.</div>
</front>
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<Abstract><AbstractText>Colored-leaf plants are increasingly popular and have been attracting more and more attentions. However, the molecular mechanism of leaf coloration in plants has not been fully understood. In this study, a colored-leaf cultivar of Populus deltoides (Caihong poplar, CHP) and green-leaf cultivar of Populus deltoides L2025 were used to explore the mechanism of leaf coloration through physiological and the whole genome resequencing analysis. The content of anthocyanins, total Chl, and carotenoids in the leaves of CHP and L2025 were evaluated. The ratio of anthocyanins to total Chl in CHP was 25.0 times higher than that in L2025; this could be attributed to the red leaf color of CHP. Based on the whole genome resequencing analysis, 951,421 polymorphic SNPs and 221,907 indels were screened between CHP and L2025. Using qRT-PCR analysis, three structural genes (flavonol synthase 1 family protein, UDP-glucose flavonoid 3-O-glucosyltransferase 3' and flavonoid 3-O-galactosyl transferase family protein) and six transcription factors (MYB-related protein Myb4, transcription factor GAMYB, PtrMYB179, transcription factor bHLH53, transcription factor bHLH3, VARICOSE family protein) may be involved in the anthocyanin synthesis pathway, which could be used as candidate genes to explore the molecular regulation mechanism of leaf coloration in Populus deltoids, and could be used in molecular breeding in the future.</AbstractText>
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</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
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</MeshHeading>
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<Month>03</Month>
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<name sortKey="Wang, Hongxue" sort="Wang, Hongxue" uniqKey="Wang H" first="Hongxue" last="Wang">Hongxue Wang</name>
<name sortKey="Wang, Tao" sort="Wang, Tao" uniqKey="Wang T" first="Tao" last="Wang">Tao Wang</name>
<name sortKey="Wang, Zhong" sort="Wang, Zhong" uniqKey="Wang Z" first="Zhong" last="Wang">Zhong Wang</name>
<name sortKey="Zhai, Henghua" sort="Zhai, Henghua" uniqKey="Zhai H" first="Henghua" last="Zhai">Henghua Zhai</name>
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Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar.

Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar.

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